{ "access_links": 3475, "access_links_definition": "Number of access entries in registry-access.tsv for this registration, including source pages, metadata, retained queries and derived tables; not distinct experiments or a count of live-verified downloads.", "access_status_counts": { "link_available_not_live_verified": 2265, "public_linked": 2, "public_verified": 1208 }, "core_registry_join_scope": "Existing explicit target IDs plus independently reviewed, project-qualified SNCA branch links; source labels alone never establish reference identity.", "core_relationship_resolution": { "disposition": { "canonical_registry_modified": false, "connection_counts": { "connected_source_qualified": 2, "not_directly_connected": 16 }, "disposition_counts": { "connected": 2, "not_applicable": 12, "partially_resolved": 1, "proposal_prepared": 2, "resolved_material": 1 }, "format": "panapta-core-registry-disposition/v1", "historical_import_provenance_pending": 1, "human_scientific_approval_created": false, "independent_target_count_claimed": false, "material_identity_fully_adjudicated_claimed": false, "not_applicable_material_counts": { "cell_line_context": 6, "cell_line_group": 1, "extracellular_vesicle": 1, "islet_tissue": 2, "mixed_species_islet_context": 1, "treated_cell_line": 1 }, "not_applicable_means": { "en": "No direct single-protein registry match is required for these source-qualified materials. Material identities, controls and source aliases can still require curation; their data remain in the core catalogue.", "zh": "这些来源限定材料无需直接匹配单一蛋白登记；具体材料身份、对照和来源别名仍可继续整理，其数据保留在核心目录中。" }, "pending_means": { "en": "Three follow-ups remain: the original HeLa import log and review of two prepared registration proposals. The source-qualified mouse ST2 material relationship is resolved.", "zh": "三项后续事项为HeLa原始导入日志及两条已备齐的登记提案审核；鼠ST2来源限定材料关系已核清。" }, "pending_reason_counts": { "simulation_reconstruction_complete_original_import_unresolved": 1, "source_qualified_registration_proposal_prepared": 2 }, "registration_proposals_prepared": 2, "registry_resolution_pending_groups": 3, "reviewed_source_groups": 18, "scientific_counts_changed": false, "scope": "Applicability to the existing single-protein reference registry; not scientific validity, source availability or exact material-identity completeness.", "source_data_removed": false, "source_evidence_updates": true, "source_evidence_url": "/web/source-evidence", "source_qualified_materials_resolved": 1, "target_ids_by_disposition": { "connected": [ 2614, 2615 ], "not_applicable": [ 79, 80, 81, 82, 83, 84, 3025, 3026, 3027, 3028, 3029, 3030 ], "partially_resolved": [ 2632 ], "proposal_prepared": [ 2631, 2633 ], "resolved_material": [ 71 ] } }, "evidence_updates": { "hela": "simulation_reconstruction_complete_original_import_unresolved", "registration_proposals": 2, "st2": "resolved_source_qualified_mouse_material", "url": "/web/source-evidence" }, "original_reason_categories": { "existing_cell_context_mixed_origin": 1, "existing_registry_connection_gap": 2, "nonprotein_material_not_in_registry": 12, "protein_reference_not_in_registry": 2, "species_reference_conflict": 1 }, "original_unmatched_groups_reviewed": 18, "reference_identity_approval_implied": false, "remaining_not_directly_connected": 16, "source_qualified_branch_links_added": 2 }, "distinct_linked_legacy_target_groups": 1020, "distinct_names": 676, "format": "panapta-registry-evidence-matrix/v1", "linked_aptamer_selection_candidate_records": 52344, "linked_aptamer_selection_target_groups": 9, "material_kind_counts": { "cell_context": 1, "mixed_constructs": 1, "protein_complex": 9, "protein_fragment": 6, "reference_only": 650, "source_named_material": 2, "unresolved": 6, "unresolved_complex": 2 }, "missing_reasons": [ "not_verified", "source_not_identified", "not_applicable", "not_integrated", "not_reported", "unresolved_identity", "not_target_specific", "not_publicly_released" ], "no_positive_target_specific_support_entries": 12, "processed_aptamer_archive_raw_files": 408, "processed_aptamer_archive_runs": 390, "public_verification": { "base_url": "https://tmbj2.tail920732.ts.net", "checked_at": "2026-10-23T05:31:59.362323+00:00", "full_download_contents_rehashed": false, "matched_registry_source_associations": 1022, "native_download_head_size_checks": 125, "release_index_sha256": "3bfbfbd83ceed73f8a7125f475d515741dcc04040a0f9e75430a6af08055be7e", "retained_count_metadata_comparisons": 1022, "round_ids_and_read_totals_revalidated_by_public_api": false, "round_label_multisets_compared": 1018, "round_metadata_gets": 1018, "scope": "Public bulk target metadata identity tuples; each matched target round-metadata GET; all native-count download HEAD/size checks. No full file contents or sequence queries fetched.", "sequence_query_contents_checked": false }, "registration_is_independent_experimental_target": false, "registrations_with_access_entries": 480, "registrations_with_retained_candidate_mapping": 434, "registrations_with_source_file_exports": 8, "registrations_without_access_entries": 197, "registry_entries": 677, "relation_counts": { "archive_lead_only": 2, "cell_context": 1, "complex_component": 8, "complex_identity_unresolved": 2, "prior_evidence_retained": 634, "reference_alias": 7, "reference_fragment": 4, "source_mismatch": 6, "source_named_target": 11, "source_unresolved": 2 }, "relationship_records": 1570, "scope_note": "All 677 registry entries are represented. Scientific support and website availability are separate. Project and file counts are contextual and cannot be added across registry rows.", "sequence_payloads_included": false, "snca_access_correction": { "full_archive_publication_claimed": false, "historical_metadata_conflicts_preserved": true, "proof_checked_at": "2026-10-23T08:20:48.343595+00:00", "public_derived_case_connected": true }, "source_classification_correction": { "canonical_database_modified": false, "download_url": "/web/registry-evidence/download/source-classifications.json", "exact_construct_identity_verified": false, "per_sequence_chemical_identity_verified": false, "raw_library_type": "DNA", "raw_target_category": "cell", "source_library_type": "RNA", "source_material_type": "protein_fibril", "source_project": "PRJEB70964", "source_target_category": "protein", "target_ids": [ 2614, 2615 ] }, "supported_or_qualified_entries": 665, "total_counts_additive_across_layers": false, "unique_public_source_count_files": 125, "unlinked_aptamer_selection_target_groups": 16, "version": "registry-evidence-matrix-20261024-r1", "whole_project_counts_assigned_to_registry_targets": false }