PANAPTA:NA:AC008770:PRJEB61115:R4:83c438953ef0
GTGACACTACACGACGGGAGGGTAAGCGAATACGGGGTGG
Length
40
log2 fold-change
16.82
P(active)
0.52
DeepAptamer binary classifier (sigmoid logit, threshold log2FC>2)
Enrichment class
strong_positive
Monotonicity
0.67
Secondary structure
MFE folding · ViennaRNA · DNA params (Mathews 2004)
GTGACACTACACGACGGGAGGGTAAGCGAATACGGGGTGG (((......)))..............((....))......
Top row = sequence (5′→3′). Bottom row = dot-bracket pairing.
A pair of matching
( / ) denotes a base
pair; . denotes an unpaired position.
MFE ΔG
-1.60
kcal/mol
Number of base pairs:
5
Length: 40 nt
Interactive 2D — drag any nucleotide · scroll to zoom · pan with mouse
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Round-level enrichment trajectory
Counts (raw read abundance) and frequency (normalised within each round).
| Round | # | Count | Frequency |
|---|---|---|---|
| R1 | 1 | 0 | 0.000e+00 |
| R2 | 2 | 0 | 0.000e+00 |
| R3 | 3 | 7 | 4.108e-03 |
| R4 | 4 | 380 | 1.159e-02 |