FOXA1_OTX1
CAP-SELEX sample OTX1_FOXA1 · 1 runs in PRJEB66722
Organism
—
Nucleic acid
DNA
Rounds available
R3
Selection-pool candidates
10,000
Top enriched selection-pool candidates
Candidate ranking reflects selection dynamics, not confirmed binding.
| Candidate sequence | Length | log2 FC | Class | Monotonicity |
|---|---|---|---|---|
|
GTATGCTGGCTTCATATACTCAGAAGAGTACATAAACCAA
PANAPTA:P55317:FOXA1_OTX1:PRJEB66722:R3:1fd2e6925767
|
40 | — | — | — |
|
GGCTGTGCATATACAATTACAACATTGTAGCATACACAGG
PANAPTA:P55317:FOXA1_OTX1:PRJEB66722:R3:c26fa9301832
|
40 | — | — | — |
|
GCGTTTCTACATACACACTTAGATGTGCATATAGTAAAGT
PANAPTA:P55317:FOXA1_OTX1:PRJEB66722:R3:71f0a82883d9
|
40 | — | — | — |
|
AAACATATAGCTGCATATAACTACATAGTGACATACAGCG
PANAPTA:P55317:FOXA1_OTX1:PRJEB66722:R3:9cc862c6e74e
|
40 | — | — | — |
|
CGACAAGTCCATATAACCATGCCTGGATGACATAGCTTGA
PANAPTA:P55317:FOXA1_OTX1:PRJEB66722:R3:8f74be6ca0d3
|
40 | — | — | — |
|
GAAACCGATTGTGCATATACTCTCGGCGAGTACATACACA
PANAPTA:P55317:FOXA1_OTX1:PRJEB66722:R3:e2e65d96c42b
|
40 | — | — | — |
|
GCTATACATATACATAAAGAGCTAGTTATGTACATATATT
PANAPTA:P55317:FOXA1_OTX1:PRJEB66722:R3:f3c03ca8a6e8
|
40 | — | — | — |
|
GATTGTATTGCGTTCATATAATTAGACCACTTACATAAAC
PANAPTA:P55317:FOXA1_OTX1:PRJEB66722:R3:3e0c512204b6
|
40 | — | — | — |
|
CGCACATACACAATGCAGGGATTTTGGTGCATATGCGCAT
PANAPTA:P55317:FOXA1_OTX1:PRJEB66722:R3:41a652b7e931
|
40 | — | — | — |
|
CTAGCAACATATAACTTAGCACGATGTGAAGTTACATATT
PANAPTA:P55317:FOXA1_OTX1:PRJEB66722:R3:d7db4a06ec42
|
40 | — | — | — |
|
CGTGCGTTCATACAACATAAAGATTTATGATGGCATAAAC
PANAPTA:P55317:FOXA1_OTX1:PRJEB66722:R3:cd81fa747051
|
40 | — | — | — |
|
CGTGCTTGCATAAAATTAAGTCCCTTGATTTCATACATGC
PANAPTA:P55317:FOXA1_OTX1:PRJEB66722:R3:250bb795efac
|
40 | — | — | — |
|
GACTTAAGGGCTTATGTAAACATTCGGCAAAACTGCGTGA
PANAPTA:P55317:FOXA1_OTX1:PRJEB66722:R3:63b9351151da
|
40 | — | — | — |
|
GCCGACAAGTACATATACTTTGACTAAAGTACATATTCTG
PANAPTA:P55317:FOXA1_OTX1:PRJEB66722:R3:64ee5eef9bc8
|
40 | — | — | — |
|
CCGCGCATACACACAGCGGAATATAGCGCAGTGTGCATAC
PANAPTA:P55317:FOXA1_OTX1:PRJEB66722:R3:f2ddf6ce3645
|
40 | — | — | — |
|
TAAAGTACATATAATACAGTTCGATGACATATACTTTTCC
PANAPTA:P55317:FOXA1_OTX1:PRJEB66722:R3:8589fb4eaf9c
|
40 | — | — | — |
|
TAATGTAATGACACATAAACATATGCTAAGTTCATATGCA
PANAPTA:P55317:FOXA1_OTX1:PRJEB66722:R3:f18879598ca6
|
40 | — | — | — |
|
CAGGATTATGAATTACATATAACATTGCGTTACATATATT
PANAPTA:P55317:FOXA1_OTX1:PRJEB66722:R3:8ee194ec42a0
|
40 | — | — | — |
|
GCACTACATGTGTTCATACAAAATCTGGCATAAACACATA
PANAPTA:P55317:FOXA1_OTX1:PRJEB66722:R3:24fd79ae22de
|
40 | — | — | — |
|
GACATACGAAGTGTACATATACGAGCCTGTACATATACAC
PANAPTA:P55317:FOXA1_OTX1:PRJEB66722:R3:383a7de71529
|
40 | — | — | — |
|
TGGCTATGCGTTCATATAACCAGACTCTGCTTACATAAAT
PANAPTA:P55317:FOXA1_OTX1:PRJEB66722:R3:b72606aab288
|
40 | — | — | — |
|
CTTTACATATAATATCAGTGATGCTTACATATAAAGTAGT
PANAPTA:P55317:FOXA1_OTX1:PRJEB66722:R3:3f24dbf757b9
|
40 | — | — | — |
|
AGTCGTGCATATAATGAACAAGTAGATCAATTACATACAC
PANAPTA:P55317:FOXA1_OTX1:PRJEB66722:R3:9f7e20787b1f
|
40 | — | — | — |
|
TATTGGCGTCGTACATAATCCGGATGAATTATATGCGAAC
PANAPTA:P55317:FOXA1_OTX1:PRJEB66722:R3:1757d0d59169
|
40 | — | — | — |
|
AGCCTTTTATATGAAACGCGTGTTTTATGTAAATATACGC
PANAPTA:P55317:FOXA1_OTX1:PRJEB66722:R3:c34b881d5174
|
40 | — | — | — |
|
AACGATGCAATTCATACATGTCCATACATGCATAAATTTG
PANAPTA:P55317:FOXA1_OTX1:PRJEB66722:R3:8a3fc91755a4
|
40 | — | — | — |
|
ATATTTGCTTCATATGCCTGACACAAGTACATAAAGCCAT
PANAPTA:P55317:FOXA1_OTX1:PRJEB66722:R3:ad08c75cdf12
|
40 | — | — | — |
|
AGGCACATATACATATAATTATGTACATATGCCCAAAAAG
PANAPTA:P55317:FOXA1_OTX1:PRJEB66722:R3:4198883c25f3
|
40 | — | — | — |
|
AATCGTACATACACGTAGAGGCACATGCATATACAAGCCA
PANAPTA:P55317:FOXA1_OTX1:PRJEB66722:R3:b6895d3cc9b9
|
40 | — | — | — |
|
TACATAGCGGATTAAGCCCGGCTACGTAAACATTGCACGT
PANAPTA:P55317:FOXA1_OTX1:PRJEB66722:R3:4ea94dff772e
|
40 | — | — | — |
|
TACATAACGGCATCATCCGTTATGTCAATAAATACTGTAC
PANAPTA:P55317:FOXA1_OTX1:PRJEB66722:R3:77c657f0f4ba
|
40 | — | — | — |
|
GTGGAAACAGGCACATATAACCATGGTGACATATACCGAG
PANAPTA:P55317:FOXA1_OTX1:PRJEB66722:R3:51f3cbce4d41
|
40 | — | — | — |
|
ATATGTGCATATATTATCGCATTCATACATACACATGTCA
PANAPTA:P55317:FOXA1_OTX1:PRJEB66722:R3:2cfd298f5c3d
|
40 | — | — | — |
|
GACTTAATCACGCTGAGTGCGTTAAGTCAGCCTGTGTTAT
PANAPTA:P55317:FOXA1_OTX1:PRJEB66722:R3:81ad7ebbcc95
|
40 | — | — | — |
|
ATCAAATTCAGTACATACACAACAGTGAGCATGTGCATAT
PANAPTA:P55317:FOXA1_OTX1:PRJEB66722:R3:f15c6cf0dca0
|
40 | — | — | — |
|
GATTGTTTGCTTCCTGGTGTCAAAGCCATTAGCGAATTCA
PANAPTA:P55317:FOXA1_OTX1:PRJEB66722:R3:6ceff4e6cc13
|
40 | — | — | — |
|
GAGTGCAATGTGCCATAATCAGTTGACCATAGCACAGTGT
PANAPTA:P55317:FOXA1_OTX1:PRJEB66722:R3:1ec28aa98eed
|
40 | — | — | — |
|
AGAGAACAGTGTTCATCTGAGACACATAAACACGGGACAG
PANAPTA:P55317:FOXA1_OTX1:PRJEB66722:R3:77c70192eceb
|
40 | — | — | — |
|
AAATTCATATACGTGAAAGAACGTACATAAATAGACGATG
PANAPTA:P55317:FOXA1_OTX1:PRJEB66722:R3:0a6348862b91
|
40 | — | — | — |
|
AGGCTATTAGTGTAAACATAATCCGCATGTTTACACAGCT
PANAPTA:P55317:FOXA1_OTX1:PRJEB66722:R3:354c9ef921f4
|
40 | — | — | — |
|
CCGCTAACGCCATAAGTTTTATAGCGTTAACTCTTTTACT
PANAPTA:P55317:FOXA1_OTX1:PRJEB66722:R3:1e55a42738f6
|
40 | — | — | — |
|
AATATCGATTCACATAAACCATATTAAGTTCATATGAAGT
PANAPTA:P55317:FOXA1_OTX1:PRJEB66722:R3:b20611d6c58b
|
40 | — | — | — |
|
CCAAACGATGTTAATCCGGAATGTTGTCGAATTAACTTTT
PANAPTA:P55317:FOXA1_OTX1:PRJEB66722:R3:e08fc6ff7dba
|
40 | — | — | — |
|
GAAGGTGATAATCCACTATGCGCGAATTAACGAGACCATC
PANAPTA:P55317:FOXA1_OTX1:PRJEB66722:R3:77ce6db62eed
|
40 | — | — | — |
|
CAGGCCGCGGATTACAGGCAGTACCCATGTAATTTGCAGC
PANAPTA:P55317:FOXA1_OTX1:PRJEB66722:R3:1b0408e3c34b
|
40 | — | — | — |
|
TCGATTAGCAATGCATACACCGTGTGAGGTGCATACATAG
PANAPTA:P55317:FOXA1_OTX1:PRJEB66722:R3:6ca1de4b4179
|
40 | — | — | — |
|
ACGGAGCTGTTATATACACGAAATCGCGTACACAAAAGCT
PANAPTA:P55317:FOXA1_OTX1:PRJEB66722:R3:31fa0edee63f
|
40 | — | — | — |
|
ATAGGATAAGTGCATATAATATTGCCATATTACATACACG
PANAPTA:P55317:FOXA1_OTX1:PRJEB66722:R3:832d2da90048
|
40 | — | — | — |
|
AACTCCTTGTGTAAACAAACGTATGTTTACATAACGTGAA
PANAPTA:P55317:FOXA1_OTX1:PRJEB66722:R3:80797d7a6a02
|
40 | — | — | — |
|
AAAACATATATTCATATAACGAAGTGGGTTACATAAATAG
PANAPTA:P55317:FOXA1_OTX1:PRJEB66722:R3:16e81fd31407
|
40 | — | — | — |
SELEX rounds
R3 ·final