GABPA_PDX1
CAP-SELEX sample PDX1_GABPA · 1 runs in PRJEB66722
Organism
—
Nucleic acid
DNA
Rounds available
R3
Selection-pool candidates
10,000
Top enriched selection-pool candidates
Candidate ranking reflects selection dynamics, not confirmed binding.
| Candidate sequence | Length | log2 FC | Class | Monotonicity |
|---|---|---|---|---|
|
GTGACCGGAAACACGTTTACGGACACAACGTACTATACGC
PANAPTA:Q06546:GABPA_PDX1:PRJEB66722:R3:4baed12c8cf9
|
40 | — | — | — |
|
GTCACATCCGGTGCGAGACGCGAACACCGGATGTGTACTA
PANAPTA:Q06546:GABPA_PDX1:PRJEB66722:R3:9aa3463bf600
|
40 | — | — | — |
|
AATACGTCCGCCGTAAATATGGTATTTCCGGCGACACATA
PANAPTA:Q06546:GABPA_PDX1:PRJEB66722:R3:ee67c9ce603f
|
40 | — | — | — |
|
TCGTTACCGTAAATGCATTTCCGGTGCATCTGGCTCTGCC
PANAPTA:Q06546:GABPA_PDX1:PRJEB66722:R3:c56ed1355223
|
40 | — | — | — |
|
AACCACCTTCGCCGGAAATGCCCAGTATTTACCGGCAGTC
PANAPTA:Q06546:GABPA_PDX1:PRJEB66722:R3:cef42a276406
|
40 | — | — | — |
|
TCTTTCGGGGACACTTCCGGCATAGCCGTAAATGACCTCG
PANAPTA:Q06546:GABPA_PDX1:PRJEB66722:R3:5d5ad10b76a2
|
40 | — | — | — |
|
TAGATAGACTGTTAATACCGGAAGTATACTTCCGGTACGC
PANAPTA:Q06546:GABPA_PDX1:PRJEB66722:R3:246c8333c4be
|
40 | — | — | — |
|
ACATCCCACCGCAACTTACGGACAAGTGCGCCGGAAGTCA
PANAPTA:Q06546:GABPA_PDX1:PRJEB66722:R3:70a38f90def8
|
40 | — | — | — |
|
ATTAACTAGCGTATACTAGAGACATCGTCACCACTAATAA
PANAPTA:Q06546:GABPA_PDX1:PRJEB66722:R3:61de1d484214
|
40 | — | — | — |
|
TGCGCACCGGATTTCCGTTTCGCCCACATCCGGTGACGCA
PANAPTA:Q06546:GABPA_PDX1:PRJEB66722:R3:b0a440e8589c
|
40 | — | — | — |
|
ATTTCCGGTGGTTAACCGGAAATCGAACGTAAAGTCCATA
PANAPTA:Q06546:GABPA_PDX1:PRJEB66722:R3:59e9c70f88cf
|
40 | — | — | — |
|
CGCCGTCGGGGGGGAAACCGTAAATGGTATTTCCGGTGAG
PANAPTA:Q06546:GABPA_PDX1:PRJEB66722:R3:793ec6c69d79
|
40 | — | — | — |
|
CGCAACTGCGATACCGGATATCCGTTCGCTAATGTTCCGG
PANAPTA:Q06546:GABPA_PDX1:PRJEB66722:R3:b993ba87fc06
|
40 | — | — | — |
|
TGTACAACAGGAAGTAGCACTTCCGGTTGCGGGTCGCAAT
PANAPTA:Q06546:GABPA_PDX1:PRJEB66722:R3:438bbe053199
|
40 | — | — | — |
|
TTCCGGCGGATATGGCTAATACCGGAAGACATTAAGCTGT
PANAPTA:Q06546:GABPA_PDX1:PRJEB66722:R3:78fb8063a9b5
|
40 | — | — | — |
|
ACGAAACCGGAAACACATTAACTTAGTTGCATCCGGTTCA
PANAPTA:Q06546:GABPA_PDX1:PRJEB66722:R3:42e44b6c0ab7
|
40 | — | — | — |
|
AATAGCATACTGGTTTCCGGCAGGGAGCACGTAAACCAAA
PANAPTA:Q06546:GABPA_PDX1:PRJEB66722:R3:25bd0b867bff
|
40 | — | — | — |
|
CCATTACACCGATAAATACGTGTATGTTCCGGTGTTCGGT
PANAPTA:Q06546:GABPA_PDX1:PRJEB66722:R3:a015a808c175
|
40 | — | — | — |
|
AACGATCCCGGAAGCTGGCTTCCGGTGTTGAACTAACCCC
PANAPTA:Q06546:GABPA_PDX1:PRJEB66722:R3:8f51c4450626
|
40 | — | — | — |
|
CCGCCCACCCCAACTAGAAACCGGAAGTGTCAAACTTACG
PANAPTA:Q06546:GABPA_PDX1:PRJEB66722:R3:fafbc8126768
|
40 | — | — | — |
|
CCCACTTCCGTGTACAACCCAGACCGGAAGTACTTACCGA
PANAPTA:Q06546:GABPA_PDX1:PRJEB66722:R3:ca972839e7ff
|
40 | — | — | — |
|
ATGACCCGCACCCCGTTAAGTAGACTTCCGGTCGCGACGA
PANAPTA:Q06546:GABPA_PDX1:PRJEB66722:R3:4106056e09da
|
40 | — | — | — |
|
GAAACTAATTGCACTTACGTCCTGTCACGGCGGAAGTGGC
PANAPTA:Q06546:GABPA_PDX1:PRJEB66722:R3:ec00146a823a
|
40 | — | — | — |
|
TCGACTTCCGGGGCGCTGACGCTAACCCGGAAGTCAGCAT
PANAPTA:Q06546:GABPA_PDX1:PRJEB66722:R3:19a9b949e1c4
|
40 | — | — | — |
|
CCCAGCACGGGCAAGTCATCGAACCGGAAACTCGTTTCCG
PANAPTA:Q06546:GABPA_PDX1:PRJEB66722:R3:05550f33747c
|
40 | — | — | — |
|
ACTTCCAGACTTCCGGTTATGCACACAACCGGATGTAAAC
PANAPTA:Q06546:GABPA_PDX1:PRJEB66722:R3:da377883f52b
|
40 | — | — | — |
|
TTCTCGCCTTGTCACCTACGACCGGAAACGCACGTACCAA
PANAPTA:Q06546:GABPA_PDX1:PRJEB66722:R3:6537c6dc20ea
|
40 | — | — | — |
|
TGACCCCGCTACCACCGCCCCCCTCCACCTCCCAACCACT
PANAPTA:Q06546:GABPA_PDX1:PRJEB66722:R3:9eaa20d25719
|
40 | — | — | — |
|
TACTAACCGGAAGCATGCCCTTTACTTAACGGTCCCCCAA
PANAPTA:Q06546:GABPA_PDX1:PRJEB66722:R3:299ad89e64a9
|
40 | — | — | — |
|
ACTGCTGTCGTGAGACGAGCGGAAGCTAGCTTCCGCTCTA
PANAPTA:Q06546:GABPA_PDX1:PRJEB66722:R3:e9de903f65d9
|
40 | — | — | — |
|
ATGAGACGATCGCTGCAGCCGGAAACGCGTTTACGGCTTC
PANAPTA:Q06546:GABPA_PDX1:PRJEB66722:R3:f7b6a5ce3300
|
40 | — | — | — |
|
GCACCGTAAGTCAAACTGCCGGTGCCCCCGACGATTGTTC
PANAPTA:Q06546:GABPA_PDX1:PRJEB66722:R3:ec57e2ae699f
|
40 | — | — | — |
|
GCGCGAGGTGACTTCCGGCGACGAATCCCCGGTAAGTCCA
PANAPTA:Q06546:GABPA_PDX1:PRJEB66722:R3:4b85bf760218
|
40 | — | — | — |
|
ACATCCGGTTAGATCTTCGCTTACCGGATGTCAACCAGTC
PANAPTA:Q06546:GABPA_PDX1:PRJEB66722:R3:111f0aa75710
|
40 | — | — | — |
|
CGTGTTTCCGGAAGTCATTACTTCGCGATGAAACGCTGCC
PANAPTA:Q06546:GABPA_PDX1:PRJEB66722:R3:64d91bbdfd5c
|
40 | — | — | — |
|
GCGTTGAACGAGAGCAAGTGCCCCGTAAGCGTACTTCCGG
PANAPTA:Q06546:GABPA_PDX1:PRJEB66722:R3:6c28cc5c7be4
|
40 | — | — | — |
|
TCGAGGAACGATTTCCGGCATTTGAGCCGTAAATGAGAAG
PANAPTA:Q06546:GABPA_PDX1:PRJEB66722:R3:0d70ee345804
|
40 | — | — | — |
|
CCACAAGTAATGCCAACTAAGCACGCATACCTGGATGAGC
PANAPTA:Q06546:GABPA_PDX1:PRJEB66722:R3:1a55043e7f76
|
40 | — | — | — |
|
GGGGGCACTTCCGGCCTCGACGCAGGAAGTAGCATTTGCA
PANAPTA:Q06546:GABPA_PDX1:PRJEB66722:R3:a38c1ce7a608
|
40 | — | — | — |
|
CTTTCCGTAAGTACTTCCGGTATCCTTGCCTAATTACCTC
PANAPTA:Q06546:GABPA_PDX1:PRJEB66722:R3:3a7bc49c41d7
|
40 | — | — | — |
|
AGACACTCTCATACCGGAAGTGACAACTTAACGGAACCGG
PANAPTA:Q06546:GABPA_PDX1:PRJEB66722:R3:cc2652aef305
|
40 | — | — | — |
|
AGCATCCGGTAAGTGAGCTAAGACCGGAAGCAAGAAAGTG
PANAPTA:Q06546:GABPA_PDX1:PRJEB66722:R3:a1f78e232639
|
40 | — | — | — |
|
AGCATACCGGAAATACCTTATTTCCTGTGTGCGTGGCTAT
PANAPTA:Q06546:GABPA_PDX1:PRJEB66722:R3:d500dfa75f6e
|
40 | — | — | — |
|
TCTGCAATTTCCGGGACACCTGCACCGGAACATTATGGCA
PANAPTA:Q06546:GABPA_PDX1:PRJEB66722:R3:e70322e971b0
|
40 | — | — | — |
|
ACGGAAGGAAGTAGACAACTTCCGTCCTAAAAGCGAATAT
PANAPTA:Q06546:GABPA_PDX1:PRJEB66722:R3:6be5b3d70c39
|
40 | — | — | — |
|
AATGACTCCCCCATTTCCGTTTCAAACGGAAATGCCGAAG
PANAPTA:Q06546:GABPA_PDX1:PRJEB66722:R3:d583fa6163ad
|
40 | — | — | — |
|
TTCCGGTTCCGGTAACTGTCTAACGTCACGCCGGAAGCCA
PANAPTA:Q06546:GABPA_PDX1:PRJEB66722:R3:b924c49226ef
|
40 | — | — | — |
|
CGATTGCGACAACCGGAAGTGCACTGCCGAAACTTCCGGT
PANAPTA:Q06546:GABPA_PDX1:PRJEB66722:R3:0dfa49f5be1a
|
40 | — | — | — |
|
TAATTTGCAGTAATTACTTCCGGTATGGCGTAGGAAGGAA
PANAPTA:Q06546:GABPA_PDX1:PRJEB66722:R3:c15453e34246
|
40 | — | — | — |
|
GCCTCGTTTCGTCCCGCTAAGAGCACTTCCGGTTCTCAGA
PANAPTA:Q06546:GABPA_PDX1:PRJEB66722:R3:2e14da0b9e12
|
40 | — | — | — |
SELEX rounds
R3 ·final