ccRCC_RCC_MF
P11_RCC_MF_2; P11_RCC_MF_3 · Differential binding cell-SELEX: method for identification of cell specific aptamers by high throughput sequencing · 3 runs in PRJEB28303
Organism
—
Nucleic acid
DNA
Rounds available
L0
Selection-pool candidates
10,000
Top enriched selection-pool candidates
Candidate ranking reflects selection dynamics, not confirmed binding.
| Candidate sequence | Length | log2 FC | Class | Monotonicity |
|---|---|---|---|---|
|
GAGTTTGGGGTAAGGGGTTGGGGAGGGACTGTGCGGTTCT
PANAPTA:NA:ccRCC_RCC_MF:PRJEB28303:L0:22f90a7fc673
|
40 | — | — | — |
|
GGGAATGTTGGAGGGTGGAGGGGGAGGAGGGTGGTGAGAG
PANAPTA:NA:ccRCC_RCC_MF:PRJEB28303:L0:60833d6825af
|
40 | — | — | — |
|
TGGGGGTAGTGGTGGTTAGGAGTGGAGGCGAGGAGAGCGG
PANAPTA:NA:ccRCC_RCC_MF:PRJEB28303:L0:d5b2d8cc32e5
|
40 | — | — | — |
|
GGGAGGGGGGGGGCAGGATCTATCCAAGAAGGGGGTTAGG
PANAPTA:NA:ccRCC_RCC_MF:PRJEB28303:L0:3f2e09f82303
|
40 | — | — | — |
|
TAGTTTGGGGTGAGGGGTTGGGGAGGGAATGCTGGTGGTA
PANAPTA:NA:ccRCC_RCC_MF:PRJEB28303:L0:e18f1baf09ec
|
40 | — | — | — |
|
TGGTGGGCGGGGGACAGAATAAGTGGGGGAGGTTGGGTGT
PANAPTA:NA:ccRCC_RCC_MF:PRJEB28303:L0:b73d09848f5c
|
40 | — | — | — |
|
CAGTTTGGGGTTAGGGGTTGGGGTGGGAGTGTAGTCGGTA
PANAPTA:NA:ccRCC_RCC_MF:PRJEB28303:L0:00cec51d611f
|
40 | — | — | — |
|
ATAGGGGGTGGAGAATGTATCGTATGGGGGGGTTGGGTGC
PANAPTA:NA:ccRCC_RCC_MF:PRJEB28303:L0:cf6e18f721eb
|
40 | — | — | — |
|
AGGGGGGGTGGTGGTTTTAGTTGCGTATGGTGGTGGGTGC
PANAPTA:NA:ccRCC_RCC_MF:PRJEB28303:L0:9610ea427c63
|
40 | — | — | — |
|
TAGTTTGGGGTTCAGGGGTTGGGGAGGGAATGCAGGCGGT
PANAPTA:NA:ccRCC_RCC_MF:PRJEB28303:L0:650532832210
|
40 | — | — | — |
|
GAAGGGGGTGGATGAGTTGGTTCGTGTGGTGGGTGGGTGC
PANAPTA:NA:ccRCC_RCC_MF:PRJEB28303:L0:03137bdfca88
|
40 | — | — | — |
|
GGTCGTGTAGGTTGGGTTGGGTGGCTTGGGTTGGGTTTGG
PANAPTA:NA:ccRCC_RCC_MF:PRJEB28303:L0:a64ee0541374
|
40 | — | — | — |
|
GGGGTTGTAAGGTGATATTGGGGTGGGTTGGGATATGGTG
PANAPTA:NA:ccRCC_RCC_MF:PRJEB28303:L0:42f429602c14
|
40 | — | — | — |
|
GGGAGGTTGTTAAGAGGGTATGGCGGGCGGTGGGCCTGGG
PANAPTA:NA:ccRCC_RCC_MF:PRJEB28303:L0:d384f0faa65e
|
40 | — | — | — |
|
GGGTGGGGGGGGGCGCGGCCTTCCGAAAGAGGGGGCTAGG
PANAPTA:NA:ccRCC_RCC_MF:PRJEB28303:L0:1f1d94a7511e
|
40 | — | — | — |
|
TGGGGGTAGTGGTGGTTAGGAGTGGAGGCGGGGAGAGCGG
PANAPTA:NA:ccRCC_RCC_MF:PRJEB28303:L0:85ea42c7b6cd
|
40 | — | — | — |
|
CGCTGTTTGGGGCTTAGGGGTAGATGGGGTTTGGAGGTAG
PANAPTA:NA:ccRCC_RCC_MF:PRJEB28303:L0:45be9ea7eb85
|
40 | — | — | — |
|
TGTGGTGATTGAAGAGCTTCGACATTAGAAGTGGGGGCGC
PANAPTA:NA:ccRCC_RCC_MF:PRJEB28303:L0:24b106c64342
|
40 | — | — | — |
|
GGACGGGTCAAGGTGTGGTTTGCTGAGGTGGGCCCTTAAT
PANAPTA:NA:ccRCC_RCC_MF:PRJEB28303:L0:f07c55acab96
|
40 | — | — | — |
|
AGTGATGGTTGGAGGAGAGAATTGGGGAGGTGTTGGGCTG
PANAPTA:NA:ccRCC_RCC_MF:PRJEB28303:L0:5ca0d73ebf25
|
40 | — | — | — |
|
GGGCGGGAGGGGGCGCGATAACATCGGAGTGGGGGTCAGG
PANAPTA:NA:ccRCC_RCC_MF:PRJEB28303:L0:1f4edee3e56c
|
40 | — | — | — |
|
TAGTTTGGGGTTAGGTGGTTGGGGAGGGAATGCGAAGGGG
PANAPTA:NA:ccRCC_RCC_MF:PRJEB28303:L0:0503c108df41
|
40 | — | — | — |
|
AGGGGTCTAGTTGTGATATTGGGGTGGGTTGGGTGATTGG
PANAPTA:NA:ccRCC_RCC_MF:PRJEB28303:L0:b8c6afb7d975
|
40 | — | — | — |
|
GAGGCTAAGTGGGGGCTGTTGCGGGGGGGTGAGTGAATGA
PANAPTA:NA:ccRCC_RCC_MF:PRJEB28303:L0:4f6b87040510
|
40 | — | — | — |
|
AAAGGGGGTGGCGTAAGGTTTCGTATGGTGGGGTGGGTGA
PANAPTA:NA:ccRCC_RCC_MF:PRJEB28303:L0:44e1a8ff5714
|
40 | — | — | — |
|
TAGTTTGGGGTAAGGGGTTGGGGAGGGAATGCAGCGCTTA
PANAPTA:NA:ccRCC_RCC_MF:PRJEB28303:L0:442fef4b94e4
|
40 | — | — | — |
|
TGGGGTGGGTGGGTGATAAATTTGTACAAATTTTGGGTCG
PANAPTA:NA:ccRCC_RCC_MF:PRJEB28303:L0:bc8b5594e52a
|
40 | — | — | — |
|
CGGAGTGGGCCTAGGGTGGGGAGAAATGTTATGGGTGGGA
PANAPTA:NA:ccRCC_RCC_MF:PRJEB28303:L0:22b211af5d25
|
40 | — | — | — |
|
ATGGGGGTGGGTTGGGATAGTGGTATTCAGTTGTGTGGCG
PANAPTA:NA:ccRCC_RCC_MF:PRJEB28303:L0:73a6a1db787d
|
40 | — | — | — |
|
AATGGGGGATGGCTGGTTGATACGTATGGTGGGTGGGTGC
PANAPTA:NA:ccRCC_RCC_MF:PRJEB28303:L0:800d1f3c5343
|
40 | — | — | — |
|
GGTTGGGGGAGGCGGGTGGGAAGAAAGTGGGGCGGGCGTA
PANAPTA:NA:ccRCC_RCC_MF:PRJEB28303:L0:18bf9933e186
|
40 | — | — | — |
|
TGCGATGGAGTGTAAGGGGGTTTAGTTTGATTTGGGTGGG
PANAPTA:NA:ccRCC_RCC_MF:PRJEB28303:L0:79119f9de114
|
40 | — | — | — |
|
CGGGTGTGGTTTGCTAAGGTGGGCCCCGGTAATGATGCAT
PANAPTA:NA:ccRCC_RCC_MF:PRJEB28303:L0:0c13743d9388
|
40 | — | — | — |
|
AGGGGTGGGAGGGGCGGTGGATTTTGCGGGGATGGAGGTG
PANAPTA:NA:ccRCC_RCC_MF:PRJEB28303:L0:309dc9610b2f
|
40 | — | — | — |
|
GGTGGGGAGGGGTGTGTGGTATTACGGATTAAGGGGGATG
PANAPTA:NA:ccRCC_RCC_MF:PRJEB28303:L0:c286d3711413
|
40 | — | — | — |
|
TAGTTTGGGGGATGGGGTTGGGGTGGGAATGTGCGGTCCT
PANAPTA:NA:ccRCC_RCC_MF:PRJEB28303:L0:19275b7cfe52
|
40 | — | — | — |
|
TAGGTGGGTGGGGGACAGAAAAGCGGGGGAGGATGGGTGT
PANAPTA:NA:ccRCC_RCC_MF:PRJEB28303:L0:f7b62908fd13
|
40 | — | — | — |
|
AAAGGGGGTTGGTGTTGTATCGTATGGAGGGGTTGGGTGC
PANAPTA:NA:ccRCC_RCC_MF:PRJEB28303:L0:c923ac37480f
|
40 | — | — | — |
|
ATGGGTGGGAAAAGTTTGGGTGGGAGATGGTATCTGCGGT
PANAPTA:NA:ccRCC_RCC_MF:PRJEB28303:L0:aef5278571e8
|
40 | — | — | — |
|
GGGAGGGGAGGTGGATTGATTGCTGTAGGGGGTGGGAGGC
PANAPTA:NA:ccRCC_RCC_MF:PRJEB28303:L0:dc7cfe45277f
|
40 | — | — | — |
|
TAGTTTGGGGTAAGGGGTTGGGGAGGGAATGGTGGGTGGA
PANAPTA:NA:ccRCC_RCC_MF:PRJEB28303:L0:dd489c1b1e11
|
40 | — | — | — |
|
GGACGTGGTTCGGGGGGTGGGTTGGAGGGTTATAGGTGGG
PANAPTA:NA:ccRCC_RCC_MF:PRJEB28303:L0:d3ab8f06121a
|
40 | — | — | — |
|
AGGTGGGAGGGGGACAGGATTGTGGGGGAGGTTGGGTGAT
PANAPTA:NA:ccRCC_RCC_MF:PRJEB28303:L0:0d319ad96f26
|
40 | — | — | — |
|
TGGACAAGGGGGTGGGTTGGGATGGTTGGTCTGTCCGGGG
PANAPTA:NA:ccRCC_RCC_MF:PRJEB28303:L0:1abb5d8f1252
|
40 | — | — | — |
|
CGGAGGGTCCTAGGGAGGGTGAGTTGTTGTTATGGGTGGG
PANAPTA:NA:ccRCC_RCC_MF:PRJEB28303:L0:ead169e1150c
|
40 | — | — | — |
|
GGTGGGTGGGGGACAAAGTGTAGAGGGGGTGGTTGGGTGT
PANAPTA:NA:ccRCC_RCC_MF:PRJEB28303:L0:c9c21975454d
|
40 | — | — | — |
|
ATGGAGGGGGGGGGTGTTTGAGTACGGATTAAGGGGGCTG
PANAPTA:NA:ccRCC_RCC_MF:PRJEB28303:L0:cdc1b0f6dfa3
|
40 | — | — | — |
|
CATAGTTTGGGGATAGGGGTTGGGGTGGGAATGGCGTCTG
PANAPTA:NA:ccRCC_RCC_MF:PRJEB28303:L0:9eaef61334a1
|
40 | — | — | — |
|
GATTGGGATAAGATGGGGTGGTGTGGGTGGGTAGGTGGTG
PANAPTA:NA:ccRCC_RCC_MF:PRJEB28303:L0:cda7aed93787
|
40 | — | — | — |
|
GTGGGGGTTACGTGCTAGTTGAGGGTGGGCGGGGGACGGC
PANAPTA:NA:ccRCC_RCC_MF:PRJEB28303:L0:fac7d536adad
|
40 | — | — | — |
SELEX rounds
L0 ·final